Third, SNP array is considered as low to moderate costs of per sample, despite the significant decrease in costs associated with

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Third, SNP array is considered as low to moderate costs of per sample, despite the significant decrease in costs associated with

NGS. It costs $28~$90 (USD) per sample for Affymetrix Axiom SNP array (personal communication), while NGS approaches have the lowest price for GBS at $35 per sample, followed by RNA-seq at $260 per sample, and whole genome sequencing (WGS) at >$500 per sample

Biology

1 answer:

Alenkasestr [34] · Answer 1 · 2023-12-23T02:05:04+03:00

Development and Applications of a High Throughput Genotyping Tool for Polyploid Crops: Single Nucleotide Polymorphism (SNP) Array.

Polypoid species play significant roles in agriculture and food production. Many crop species are polyploid, such as potato, wheat, strawberry, and sugarcane.

Genotyping has been a daunting task for genetic studies of polyploid crops, which lags far behind the diploid crop species.

Single nucleotide polymorphism (SNP) array is considered to be one of, high-throughput, relatively cost-efficient and automated genotyping approaches.

However, there are significant challenges for SNP identification in complex, polyploid genomes, which has seriously slowed SNP discovery and array development in polyploid species.

Ploidy is a significant factor impacting SNP qualities and validation rates of SNP markers in SNP arrays, which has been proven to be a very important tool for genetic studies and molecular breeding.

This review presents a complete overview of SNP array development and applications in polypoid crops, which will benefit the research in molecular breeding and genetics of crops with complex genomes.

To learn more about Single Nucleotide Polymorphism: brainly.com/question/7882029

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