Both the kingdoms archaea and eubacteria comprise of prokaryotes yet there are some differences present between the two kingdoms.
The archaea have a distinct evolutionary history as compared to the eubacteria. The cell wall of archaea is made up of Pseudo-peptidoglycan where as the cell wall of eubacteria is made up of peptidoglycan or lipopolysaccharide. Interior membranes cannot be found in the archaea but are present in the eubacteria.
