The difference between the "Question" and the "Hypothesis" is that a hypothesis is what you believe is the answer to the question based off of limited evidence while the question is just a regular question e.x. (for question) "Why is the water moving to the south?" then using whatever evidence they will have they would do a hypothesis e.x. (for hypothesis) I believe the water is moving south due to the wind coming down from the north... or due to a current.
Perhaps the most significant factor that affects the biogeochemical cycles in the terms of human involvement is global warming, which disrupts natural cycles on various levels.