Answer:
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Instinct - a motor response initiated by the body totally controlled by an external stimulus. An instinct is by definition, a behavior.
Intuition - A sudden alignment of neuronal pathways that joins weakly associated concepts, ideas, facts, into a neuronal network that pulls conscious selective attention skills away from current activities. May induce a positive somatic reaction estbalishing a pleasuraable experience from the thought or idea.
In more colloquial terms (e.g. woman's intuition) its activation of an established network in response to multiple external stimuli that alone would not draw attention. However, it is still a cognitive process whereas instinct is a behavioral process. This should help:
The setting was all wrong, his intuition was telling him this was a set-up. Suddenly it all made sense, the ill fitting uniform on the guard, the broken security camera, the elevator being out of order, instinctively he dropped to the floor and reached for his gun" - intuition - thought resulting from multiple stimuli meaningless on their own, instinct ; immediate reaction WITHOUT forethought.
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