I guess it just works that way
Sounds like the puppy has round worm, if that's the type of answer your looking for..
Fossils only form if certain qualifications are met, and some organisms cannot meet them, so they just cease to exist, not a single sign of them. This could happen if they were organisms that decayed completely. Fossilization can include freezing, drying, and encasement, usually in tar or resin.
The control is the group of no fertilizers.
A control in an experiment is usually the group without the variable to be tested. In this case, the farmer wanted to test the effects of fertilizers, therofre the group without it is the control group.